(Selected Publications)
Lienhart, P.H., Rohra, V.*, Clement, C.*, Toppen, L.C., Rizzo, D.M., Scarborough, M. 2024. Landfill intermediate cover soil microbiomes and their potential for mitigating greenhouse gas emissions revealed through metagenomics. Science of the Total Environment, 925, 171697. https://doi.org/10.1016/j.scitotenv.2024.171697 [IF = 10.7]
DeCola, A.C., Toppen, L.C., Brown, K.P., Dadkhah, A., Rizzo, D.M., Ziels, R.M., Scarborough, M. 2024. Microbiome assembly and stability during start-up of a full-scale, two-phase anaerobic digester fed cow manure and mixed organic feedstocks. https://doi.org/10.1016/j.biortech.2023.130247 Bioresource Technology, 394, 130247. [IF = 11.2]
McDaniel, E.A., Scarborough, M., Mulat, D.G., Lin, X., Sampara, P.S., Olson, H.M., Yopung, R.P., Eder, E. K., Attah, I.K., Markillie, L.M., Hoyt, D.W., Lipton, M.S., Hallam, S.J., Ziels, R.M. 2023. Diverse electron carriers drive syntrophic interactions in an enriched anaerobic acetate-oxidizing consortium. ISME Journal. https://doi.org/10.1038/s41396-023-01542-6 [IF = 11.0].
Porterfield, K., Scarborough, M., Roy, E. 2023. Organics recycling tradeoffs: Biogas potential and microplastic content of mechanically depackaged food waste. ACS Sustainable Chemistry and Engineering. ttps://doi.org/10.1021/acssuschemeng.3c01710 [IF = 9.22]
Myers, K., Ingle, A., Walters, K., Fortney, N., Scarborough, M., Donohue, T., Noguera, D. 2023. Comparison of metagenomes from fermentation of various agroindustrial residues suggests a common model of community organization. Frontiers in Bioengineering and Biotechnology. 11. https://www.frontiersin.org/articles/10.3389/fbioe.2023.1197175/full [IF = 5.66]
Neher, D., Harris, J., Horner, C., Scarborough, M. Badireddy, R., Faulkner, J., White, A., Darby, H., Farley, J., Von-Wettberg, E. 2022. Resilient Soils for Resilient Farms: An Integrative Approach to Assess, Promote and Value Soil Health for Small- and Medium-Size Farms. Phytobiomes. [IF = 3.24]
Scarborough, MJ., Lawson, CE., DeCola, AC., Gois, IM. 2022. Microbiomes for sustainable biomanufacturing. Current Opionin in Micorbiology (65) 8. https://doi.org/10.1016/j.mib.2021.09.015 [IF = 7.93]
Stamatopoulou, P., Malkowski, J.*, Conrado, L., Brown, K.*, Scarborough, M. 2020. Fermentation of Organic Residues to Beneficial Chemicals: A Review of Medium-Chain Fatty Acid Production. Processes 8(12), 1571. https://doi.org/10.3390/pr8121571. [IF = 3.04]
Scarborough, MJ., Hamilton, JJ., Erb, EE., Donohue, TJ., Noguera, DR. 2020. Diagnosing and predicting mixed culture fermentations with unicellular and guild-based metabolic models. mSystems 5:e00755- 20. https://doi.org/10.1128/mSystems.00755-20. [IF = 6.63]
Scarborough, MJ., Meyers, KM., Donohue, TJ., Noguera, DR. 2020. Multi-omic analysis of medium-chain fatty acid synthesis by Candidatus Pseudoramibacter fermentans, sp. nov., and Candidatus Weimeria bifida, gen. nov., sp. nov.. Applied and Environmental Microbiology 10.1128/AEM.02242-19. https://doi.org/10.1128/AEM.02242-19 (Spotlight Selection) [IF = 4.02]
Scarborough, MJ., Lawson, CE., Hamilton, JJ., Donohue, TJ., Noguera, DR. 2018. Metatranscriptomic and thermodynamic insights into medium-chain fatty acid production. mSystems 3 (6) 00221-18. [Editor’s Pick] [IF = 6.60]
Scarborough, MJ., Lynch, G., Dickson, M., McGee, M., Donohue, T., Noguera, DR. 2018. Increasing the economic value of lignocellulosic stillage through medium-chain fatty acid production. Biotechnology for Biofuels 11 (1), 200. [IF = 5.45]